The file darpa.rhino.rma.(n=171).(excluding.39548.39563).txt is the normalized rhino data

~lincoln/phd/readme.txt describes the normalization process

Row 1 begins with a label followed by a CEL file names of the samples
(space separated, I think)
The remaining rows begin with a probe id followed by normalized
readings of that probe for the corresponding sample

A CEL file name has the form 
  1359_39407_H133A2_14182_S04771.CEL
or
  1359_39407_H133A2_14182_S04771@N2.CEL  
The sample id (eaid) is between the first and second _s
(for example 39407 in the above file names).

The @N2 indicates a replicate.  
Generally only subjects 6,8 have replicates.

One exception is
  1359_39472_H133A2_13993_S04946@N2.CEL
for which there is no non-replicate
i.e no filename 1359_39472_H133A2_13993_S04946.CEL

Example probe ids are 1007_s_at  and AFFX-r2-P1-cre-5_at