Concentration ranges by class (class definition below) Class lower bound upper bound default 100nM 2.0mM lower_default 1.0nM 2.0mM particle 1e-22M 10nM protein 1e-16M 1.0uM large 100fM 100uM absent 1e-40M 1e-40M aminoacid 100nM 10mM potential 10mM 100.0M Glucono-1,5-lactone-6P 10uM 10mM Acetyl-CoA 1.0uM 10mM Aspartate 1.0uM 10mM CO2 10mM 40mM GAP 1.0uM 10mM Fe2+(s) 62mM 62mM Fructose-1,6PP 10uM 10mM Fructose-6P 10uM 10mM Glucose-6P 10uM 10mM Glucose(s) 10uM 20mM Glutamate 100nM 100mM DHAP 1.0uM 100mM H+(PG) 20nM 500nM H+(PG)(c) 20nM 500nM H+(PG)(m) 10fM 10pM Proton-gradient 10uM 100000.0M HCO3- 100nM 25mM K+(s) 22mM 22mM NH4+ 1.0uM 100mM NH4+(s) 1.0uM 100mM Na+(s) 160mM 160mM Na+ 10mM 10mM O2 100nM 1.0mM O2(s) 8.2uM 8.2uM Pi 8.5mM 14mM Pi(s) 100uM 56mM OAA 100nM 1.0mM PPi 1.0nM 100nM Pyruvate 1.0uM 10mM Ribose-5P 1.0uM 10mM Sulfate 100nM 25mM Sulfate(s) 3.0mM 3.0mM Sulfite 100nM 25mM UDP-glucose 10uM 100mM sn-Glycerol-3P 10uM 10mM ATP 298uM 378uM ADP 92uM 172uM AMP 1.0uM 10mM Isocitrate 15uM 64uM Citrate 5.0mM 20mM AKG 100uM 1.0mM PEP 1.0uM 100uM cis-Aconitate 100nM 1.0uM Malate 500uM 10mM OAA 1.0uM 100uM NAD+ 10uM 200uM NADH 10uM 100uM NADP+ 10uM 200uM NADPH 10uM 200uM Oxalosuccinate 10pM 2.0mM Concentration class definition class (default for all other metabolites) Metabolite Name Compartment class HC00001 Albumin c protein HC00001 Albumin s protein HC00001 Albumin l protein HC00002 Antichymotrypsin c protein HC00002 Antichymotrypsin s protein HC00002 Antichymotrypsin l protein HC00003 Antitrypsin c protein HC00003 Antitrypsin s protein HC00003 Antitrypsin l protein HC00004 ApoA1 r protein HC00004 ApoA1 c protein HC00004 ApoA1 s protein HC00004 ApoA1 l protein HC00005 ApoB100 r protein HC00005 ApoB100 c protein HC00005 ApoB100 l protein HC00006 ApoC1 r protein HC00006 ApoC1 c protein HC00007 ApoC2 r protein HC00007 ApoC2 c protein HC00008 ApoC3 r protein HC00008 ApoC3 c protein HC00009 ApoE r protein HC00009 ApoE c protein HC00009 ApoE l protein HC00012 ATP r ATP HC00012 ATP c ATP HC00012 ATP s ATP HC00012 ATP l ATP HC00012 ATP m ATP HC00012 ATP p ATP HC00013 NAD+ r NAD+ HC00013 NAD+ c NAD+ HC00013 NAD+ m NAD+ HC00013 NAD+ p NAD+ HC00014 NADH r NADH HC00014 NADH c NADH HC00014 NADH m NADH HC00014 NADH p NADH HC00015 NADPH r NADPH HC00015 NADPH c NADPH HC00015 NADPH m NADPH HC00015 NADPH p NADPH HC00016 NADP+ r NADP+ HC00016 NADP+ c NADP+ HC00016 NADP+ m NADP+ HC00016 NADP+ p NADP+ HC00017 O2 r O2 HC00017 O2 c O2 HC00017 O2 s O2(s) HC00017 O2 m O2 HC00017 O2 p O2 HC00018 ADP r ADP HC00018 ADP c ADP HC00018 ADP s ADP HC00018 ADP l ADP HC00018 ADP m ADP HC00018 ADP p ADP HC00019 Pi r Pi HC00019 Pi c Pi HC00019 Pi s Pi(s) HC00019 Pi l Pi HC00019 Pi m Pi HC00019 Pi p Pi HC00021 CO2 r CO2 HC00021 CO2 b CO2 HC00021 CO2 c CO2 HC00021 CO2 s CO2 HC00021 CO2 m CO2 HC00021 CO2 p CO2 HC00023 PPi r PPi HC00023 PPi c PPi HC00023 PPi s PPi HC00023 PPi m PPi HC00023 PPi n PPi HC00023 PPi p PPi HC00024 NH3 c NH4+ HC00024 NH3 s NH4+(s) HC00024 NH3 m NH4+ HC00030 AMP r AMP HC00030 AMP c AMP HC00030 AMP s AMP HC00030 AMP m AMP HC00030 AMP p AMP HC00032 Pyruvate c Pyruvate HC00032 Pyruvate s Pyruvate HC00032 Pyruvate m Pyruvate HC00032 Pyruvate p Pyruvate HC00033 Acetyl-CoA r Acetyl-CoA HC00033 Acetyl-CoA c Acetyl-CoA HC00033 Acetyl-CoA m Acetyl-CoA HC00033 Acetyl-CoA p Acetyl-CoA HC00034 Glutamate c Glutamate HC00034 Glutamate s Glutamate HC00034 Glutamate l Glutamate HC00034 Glutamate m Glutamate HC00035 AKG c AKG HC00035 AKG s AKG HC00035 AKG m AKG HC00035 AKG p AKG HC00038 UDP-glucose r UDP-glucose HC00038 UDP-glucose c UDP-glucose HC00038 UDP-glucose s UDP-glucose HC00040 Glucose s Glucose(s) HC00043 GDP c ADP HC00043 GDP s ADP HC00043 GDP m ADP HC00044 OAA c OAA HC00044 OAA m OAA HC00045 Glycine c aminoacid HC00045 Glycine s aminoacid HC00045 Glycine l aminoacid HC00045 Glycine m aminoacid HC00048 Alanine c aminoacid HC00048 Alanine s aminoacid HC00048 Alanine l aminoacid HC00048 Alanine m aminoacid HC00051 GTP c ATP HC00051 GTP s ATP HC00051 GTP m ATP HC00051 GTP n ATP HC00053 Lysine c aminoacid HC00053 Lysine s aminoacid HC00053 Lysine l aminoacid HC00053 Lysine m aminoacid HC00055 Aspartate c Aspartate HC00055 Aspartate s Aspartate HC00055 Aspartate l Aspartate HC00055 Aspartate m Aspartate HC00062 Sulfate b Sulfate HC00062 Sulfate c Sulfate HC00062 Sulfate s Sulfate(s) HC00062 Sulfate m Sulfate HC00065 Arginine c aminoacid HC00065 Arginine s aminoacid HC00065 Arginine l aminoacid HC00065 Arginine m aminoacid HC00067 Glutamine c aminoacid HC00067 Glutamine s aminoacid HC00067 Glutamine l aminoacid HC00067 Glutamine m aminoacid HC00068 Serine c aminoacid HC00068 Serine s aminoacid HC00068 Serine l aminoacid HC00068 Serine m aminoacid HC00075 Methionine c aminoacid HC00075 Methionine s aminoacid HC00075 Methionine l aminoacid HC00075 Methionine m aminoacid HC00076 PEP c PEP HC00076 PEP m PEP HC00080 Tryptophan c aminoacid HC00080 Tryptophan s aminoacid HC00080 Tryptophan l aminoacid HC00081 Phenylalanine c aminoacid HC00081 Phenylalanine s aminoacid HC00081 Phenylalanine l aminoacid HC00081 Phenylalanine m aminoacid HC00083 H+(PG) c H+(PG)(c) HC00083 H+(PG) s H+(PG) HC00083 H+(PG) m H+(PG)(m) HC00083 H+(PG) p H+(PG) HC00085 Tyrosine c aminoacid HC00085 Tyrosine s aminoacid HC00085 Tyrosine l aminoacid HC00085 Tyrosine m aminoacid HC00088 Fructose-6P c Fructose-6P HC00094 Glucose-6P r Glucose-6P HC00094 Glucose-6P c Glucose-6P HC00095 sn-Glycerol-3P c sn-Glycerol-3P HC00095 sn-Glycerol-3P m sn-Glycerol-3P HC00095 sn-Glycerol-3P p sn-Glycerol-3P HC00096 Sulfite c Sulfite HC00096 Sulfite m Sulfite HC00099 Cysteine c aminoacid HC00099 Cysteine s aminoacid HC00099 Cysteine l aminoacid HC00099 Cysteine m aminoacid HC00109 DHAP c DHAP HC00109 DHAP s DHAP HC00109 DHAP p DHAP HC00115 Ribose-5P r Ribose-5P HC00115 Ribose-5P c Ribose-5P HC00116 GAP c GAP HC00121 Leucine c aminoacid HC00121 Leucine s aminoacid HC00121 Leucine l aminoacid HC00121 Leucine m aminoacid HC00133 Histidine c aminoacid HC00133 Histidine s aminoacid HC00133 Histidine l aminoacid HC00133 Histidine m aminoacid HC00145 Proline c aminoacid HC00145 Proline s aminoacid HC00145 Proline l aminoacid HC00145 Proline m aminoacid HC00146 Malate c Malate HC00146 Malate m Malate HC00148 Asparagine c aminoacid HC00148 Asparagine s aminoacid HC00148 Asparagine l aminoacid HC00148 Asparagine m aminoacid HC00153 Citrate c Citrate HC00153 Citrate s Citrate HC00153 Citrate m Citrate HC00174 Valine c aminoacid HC00174 Valine s aminoacid HC00174 Valine l aminoacid HC00174 Valine m aminoacid HC00178 Cholesterol r large HC00178 Cholesterol b large HC00178 Cholesterol c large HC00178 Cholesterol s large HC00178 Cholesterol l large HC00179 Threonine c aminoacid HC00179 Threonine s aminoacid HC00179 Threonine l aminoacid HC00179 Threonine m aminoacid HC00216 K+ s K+(s) HC00253 HCO3- b HCO3- HC00253 HCO3- c HCO3- HC00253 HCO3- s HCO3- HC00253 HCO3- m HCO3- HC00266 Isocitrate c Isocitrate HC00266 Isocitrate m Isocitrate HC00266 Isocitrate p Isocitrate HC00282 Acetoacetyl-CoA c lower_default HC00282 Acetoacetyl-CoA m lower_default HC00282 Acetoacetyl-CoA p lower_default HC00289 Thioredoxin c protein HC00300 Fructose-1,6PP c Fructose-1,6PP HC00334 Isoleucine c aminoacid HC00334 Isoleucine s aminoacid HC00334 Isoleucine l aminoacid HC00334 Isoleucine m aminoacid HC00342 cis-Aconitate c cis-Aconitate HC00342 cis-Aconitate m cis-Aconitate HC00572 Crotonyl-CoA m lower_default HC00591 2-Oxoglutaramate c lower_default HC00591 2-Oxoglutaramate m lower_default HC00686 (S)-3-Hydroxybutyryl-CoA m lower_default HC00733 Glucono-1,5-lactone-6P r Glucono-1,5-lactone-6P HC00733 Glucono-1,5-lactone-6P c Glucono-1,5-lactone-6P HC00763 Na+ r Na+ HC00763 Na+ c Na+ HC00763 Na+ s Na+(s) HC00765 NH4+ c NH4+ HC00765 NH4+ s NH4+(s) HC01022 (3Z)-Dodecenoyl-CoA m lower_default HC01078 (2E)-Dodecenoyl-CoA m lower_default HC01078 (2E)-Dodecenoyl-CoA p lower_default HC01161 Apo-ACP c protein HC01397 (S)-3-Hydroxyhexadecanoyl-CoA m lower_default HC01397 (S)-3-Hydroxyhexadecanoyl-CoA p lower_default HC01398 3-Oxopalmitoyl-CoA m lower_default HC01398 3-Oxopalmitoyl-CoA p lower_default HC01399 (S)-3-Hydroxytetradecanoyl-CoA m lower_default HC01399 (S)-3-Hydroxytetradecanoyl-CoA p lower_default HC01400 3-Oxotetradecanoyl-CoA m lower_default HC01400 3-Oxotetradecanoyl-CoA p lower_default HC01402 3-Oxododecanoyl-CoA m lower_default HC01402 3-Oxododecanoyl-CoA p lower_default HC01403 (S)-Hydroxydecanoyl-CoA m lower_default HC01403 (S)-Hydroxydecanoyl-CoA p lower_default HC01404 3-Oxodecanoyl-CoA m lower_default HC01404 3-Oxodecanoyl-CoA p lower_default HC01405 (S)-Hydroxyoctanoyl-CoA m lower_default HC01406 3-Oxooctanoyl-CoA m lower_default HC01407 (S)-Hydroxyhexanoyl-CoA m lower_default HC01408 3-Oxohexanoyl-CoA m lower_default HC01410 (2E)-Hexenoyl-CoA m lower_default HC01411 (2E)-Hexadecenoyl-CoA r lower_default HC01411 (2E)-Hexadecenoyl-CoA c lower_default HC01411 (2E)-Hexadecenoyl-CoA m lower_default HC01411 (2E)-Hexadecenoyl-CoA p lower_default HC01412 (2E)-Tetradecenoyl-CoA m lower_default HC01412 (2E)-Tetradecenoyl-CoA p lower_default HC01414 (2E)-Decenoyl-CoA m lower_default HC01414 (2E)-Decenoyl-CoA p lower_default HC01415 (2E)-Octenoyl-CoA m lower_default HC01434 Oxalosuccinate c Oxalosuccinate HC01434 Oxalosuccinate m Oxalosuccinate HC01434 Oxalosuccinate p Oxalosuccinate HC01846 Fe2+ s Fe2+(s) HC01852 Fibrinogen c protein HC01852 Fibrinogen s protein HC01852 Fibrinogen l protein HC01939 Haptoglobin c protein HC01939 Haptoglobin s protein HC01939 Haptoglobin l protein HC01940 HDL r particle HC01940 HDL s particle HC01940 HDL l particle HC01942 Plasminogen c protein HC01942 Plasminogen s protein HC01942 Plasminogen l protein HC01943 Prothrombin c protein HC01943 Prothrombin s protein HC01943 Prothrombin l protein HC01944 ApoTransferin c protein HC01944 ApoTransferin s protein HC01944 ApoTransferin l protein HC01945 VLDL r particle HC01945 VLDL s particle HC01945 VLDL l particle HC01971 LDL s particle HC01971 LDL l particle HC02112 NADH-redox-potential r potential HC02112 NADH-redox-potential c potential HC02112 NADH-redox-potential m potential HC02112 NADH-redox-potential p potential HC02113 NADPH-redox-potential r potential HC02113 NADPH-redox-potential c potential HC02113 NADPH-redox-potential m potential HC02113 NADPH-redox-potential p potential HC02114 FADH-redox-potential c potential HC02115 Proton-gradient c Proton-gradient HC02115 Proton-gradient m Proton-gradient